Biomarker discovery & validation
Pipelines modeling EEG, ERP, wearable, speech, and cognitive data across trial cohorts and legacy datasets, applying signal processing, statistics, and machine learning to link physiological signals to clinical outcomes.
What
Biomarker discovery and validation across Alto’s data: EEG, ERP, wearable, speech, and cognitive signals modelled across trial cohorts and legacy datasets, using signal processing, statistics, and machine learning to connect a physiological measurement to a clinical outcome.
Resting-state EEG — recorded with no task at all — is the hardest part of it, because it is the cheapest signal to collect and the least constrained to interpret. One resting feature, gamma-band sample entropy, became the patient-selection biomarker for ALTO-300. A 2025 SOBP poster showed that dopamine depletion increases it in humans (d=0.94, p=0.006) and that the same shift appears in mice, linking the compound’s dopaminergic mechanism to the marker used to select patients for it.
Why it mattered
Precision psychiatry only works if a measurement taken before treatment predicts who responds to it. The dosing, the endpoints, and the statistics of a trial all assume that selection step is real. Validating a marker mechanistically, and not only correlationally, is what makes it defensible enough to enrol patients on.
My role
Joined before Alto’s clinical trials were running, into a codebase still being built: research on historical and legacy datasets, patient-stratification modelling, and resting-state EEG preprocessing pipelines built from scratch — infrastructure, Python package development, feature development, literature review, and marker validation. First author on the SOBP 2025 dopamine-depletion poster.
Outcome
EEG biomarkers from this work were used in Phase 2 trials for both major depressive disorder and schizophrenia.
Assets
poster
Poster, SOBP 2025 — Gamma band EEG sample entropy, a patient selection biomarker for ALTO-300, is increased by dopamine depletion in humans and mice
2025-04